Models / KEA3 - tomato

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Tomato KEA3 model

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1000
lumen_volume_per_area_membrane
molChl_per_area_membrane

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2.302585092994046
F
T

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1000
K_lumen_conc_initial
molChl_per_area_membrane

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1000
K_stroma_conc_initial
molChl_per_area_membrane

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Generated Python Code

import numpy as np

def model(
    time: float,
    variables: list[float], 
):
    B0, B1, B2, PQH2, ATP, H_lumen, delta_psi, Vx, PsbS, ATPactivity, K_lumen, K_stroma = variables
    PPFD = 10
    PSIItot = 2.5
    PQtot = 20
    APtot = 50
    PsbStot = 1
    Xtot = 1
    O2ex = 8
    Pi = 0.01
    k_b6f = 0.22
    pKreg = 6.4
    kActATPase = 0.01
    kDeactATPase = 0.002
    kATPsynthase = 20
    kATPconsumption = 10
    HPR = 4.666666666666667
    pKE0 = 7.211142552636095
    b = 3.1924977471697407
    kPQH2 = 250
    kPTOX = 0.01
    kH_Qslope = 5000000000
    kH0 = 500000000
    kF = 625000000
    kP = 6939318750
    pH_stroma = 7.8
    kleak = 1000
    bH = 100
    kDeepoxV = 0.00096
    kEpoxZ = 0.0013824
    KphSatZ = 5.8
    KZsat = 0.65
    nHX = 5
    nHZ = 3
    nHL = 3
    kDeprot = 0.0336
    kProt = 0.07392
    KphSatLHC = 5.8
    gamma0 = 0.1
    gamma1 = 1
    gamma2 = 8
    gamma3 = 2
    pK_KEA3 = 6.75
    k_KEA3 = 5
    K_lumen_conc_initial = 0.1
    K_stroma_conc_initial = 0.1
    ATP_thres_KEA3 = 20.5
    c = 0.1
    F = 96.485
    R = 0.0083
    T = 298
    E0QAQAm = -0.14
    E0PQPQH2 = 0.354
    E0PCPCm = 0.38
    DeltaG0_ATP = 30.6
    e = 2.71828
    lumen_volume_per_area_membrane = 0.0014
    stroma_volume_per_area_membrane = 0.0112
    molChl_per_area_membrane = 0.00035
    thylakoid_membrane_capacitance = 0.006
    pHlumen_init = 7.2
    RT = R * T
    pH_lumen = - (np.log((0.001 * H_lumen * molChl_per_area_membrane) / (lumen_volume_per_area_membrane))) / (np.log(10))
    H_lumen_conc = (0.001 * H_lumen * molChl_per_area_membrane) / (lumen_volume_per_area_membrane)
    H_stroma = (1000 * stroma_volume_per_area_membrane * (10) ** (- pH_stroma)) / (molChl_per_area_membrane)
    H_stroma_conc = (0.001 * H_stroma * molChl_per_area_membrane) / (stroma_volume_per_area_membrane)
    delta_pH = pH_lumen + - pH_stroma
    delta_pH_V = - (2.302585092994046 * R * T * delta_pH) / (F)
    pmfV = delta_psi + - (2.302585092994046 * R * T * delta_pH) / (F)
    volts_per_charge = (1 * F * molChl_per_area_membrane) / (thylakoid_membrane_capacitance)
    PQ = PQtot + - PQH2
    ADP = APtot + - ATP
    PsbSP = PsbStot + - PsbS
    Zx = Xtot + - Vx
    Keq_PQH2 = np.exp((2 * E0PQPQH2 * F + - 2 * E0QAQAm * F + - 4.605170185988092 * R * T * pH_stroma) / (R * T))
    Keqcytb6f = np.exp((- 2 * E0PQPQH2 * F + - 2 * F * pmfV + 2 * E0PCPCm * F + 4.605170185988092 * R * T * pH_lumen) / (R * T))
    KeqATPsyn = Pi * np.exp((- DeltaG0_ATP + F * HPR * pmfV) / (R * T))
    ATP_pmf_act = ((e) ** ((F * b * pmfV) / (R * T) + np.log((10) ** (- pKE0)))) / (1 + (e) ** ((F * b * pmfV) / (R * T) + np.log((10) ** (- pKE0))))
    pHmod = 1 + - (1) / (1 + (10) ** (pH_lumen + - pKreg))
    k_cytb6f = k_b6f * pHmod
    Q0 = PsbS * Vx * gamma0
    Q1 = PsbSP * Vx * gamma1
    Q2 = PsbSP * Zx * gamma2
    Q3 = PsbS * Zx * gamma3
    Quencher_act = Q0 + Q1 + Q2 + Q3
    B3 = PSIItot + - B0 + - B1 + - B2
    rel_B0 = (B0) / (PSIItot)
    rel_B1 = (B1) / (PSIItot)
    rel_B2 = (B2) / (PSIItot)
    rel_B3 = (B3) / (PSIItot)
    qL = (B1 + B2) / (PSIItot)
    Fluo = (B0 * kF) / (kF + kH0 + kP + Quencher_act * kH_Qslope) + (B2 * kF) / (kF + kH0 + Quencher_act * kH_Qslope)
    PsbS_deprot_act = ((KZsat) ** (nHZ)) / ((KZsat) ** (nHZ) + (Zx) ** (nHZ))
    K_stroma_conc = (0.001 * K_stroma * molChl_per_area_membrane) / (stroma_volume_per_area_membrane)
    K_lumen_conc = (0.001 * K_lumen * molChl_per_area_membrane) / (lumen_volume_per_area_membrane)
    reg_KEA3_ATP = (1 + - c) / (1 + np.exp((ATP + - ATP_thres_KEA3) / (c)))
    reg_KEA3_pH = ((10) ** (pH_lumen + - pK_KEA3)) / (1 + (10) ** (pH_lumen + - pK_KEA3))
    reg_KEA3 = reg_KEA3_ATP * reg_KEA3_pH
    B01 = B0 * PPFD
    B10Q = B1 * (kH0 + Quencher_act * kH_Qslope)
    B10F = B1 * kF
    vps2 = 0.5 * B1 * kP
    B20 = B2 * PQ * kPQH2 + - (B0 * PQH2 * kPQH2) / (Keq_PQH2)
    B23 = B2 * PPFD
    B32F = B3 * kF
    B32Q = B3 * (kH0 + Quencher_act * kH_Qslope)
    vPQox = PQH2 * (O2ex * kPTOX + (Keqcytb6f * PPFD * k_cytb6f) / (1 + Keqcytb6f)) + - (PPFD * k_cytb6f * (PQtot + - PQH2)) / (1 + Keqcytb6f)
    vATPactivity = kActATPase * (1 + - ATPactivity) if PPFD > 0 else - ATPactivity * kDeactATPase
    vATPsynthase = ATP_pmf_act * ATPactivity * kATPsynthase * (ADP + - (ATP) / (KeqATPsyn))
    vATPcons = ATP * kATPconsumption
    vleak = kleak * (H_lumen_conc + - H_stroma_conc)
    vXdeepox = (Vx * kDeepoxV * (H_lumen) ** (nHX)) / ((H_lumen) ** (nHX) + ((1000 * lumen_volume_per_area_membrane * (10) ** (- KphSatZ)) / (molChl_per_area_membrane)) ** (nHX))
    vEpoxZ = Zx * kEpoxZ
    vPsbSP = (PsbS * kProt * (H_lumen) ** (nHL)) / ((H_lumen) ** (nHL) + ((1000 * lumen_volume_per_area_membrane * (10) ** (- KphSatLHC)) / (molChl_per_area_membrane)) ** (nHL))
    vPsbS = PsbSP * PsbS_deprot_act * kDeprot
    vKEA3_in = max(0, (1000 * k_KEA3 * reg_KEA3 * stroma_volume_per_area_membrane * (H_lumen_conc * K_stroma_conc + - H_stroma_conc * K_lumen_conc)) / (molChl_per_area_membrane))
    vKEA3_out = max(0, (1000 * k_KEA3 * lumen_volume_per_area_membrane * reg_KEA3 * (H_stroma_conc * K_lumen_conc + - H_lumen_conc * K_stroma_conc)) / (molChl_per_area_membrane))
    dB0dt = -2*B01+2*B10Q+2*B10F+2*B20
    dB1dt = +2*B01-2*B10Q-2*B10F-2*vps2
    dB2dt = +2*vps2-2*B20-2*B23+2*B32F+2*B32Q
    dPQH2dt = +B20-vPQox
    dATPdt = +vATPsynthase-vATPcons
    dH_lumendt = +((2) / (bH))*vps2+((4) / (bH))*vPQox+(- (HPR) / (bH))*vATPsynthase+(- (1) / (bH))*vleak+(- (1) / (bH))*vKEA3_in+((1) / (bH))*vKEA3_out
    ddelta_psidt = +((2 * volts_per_charge) / (bH))*vps2+((4 * volts_per_charge) / (bH))*vPQox+(- (HPR * volts_per_charge) / (bH))*vATPsynthase+(- (volts_per_charge) / (bH))*vleak
    dVxdt = -vXdeepox+vEpoxZ
    dPsbSdt = -vPsbSP+vPsbS
    dATPactivitydt = +vATPactivity
    dK_lumendt = +vKEA3_in-vKEA3_out
    dK_stromadt = -vKEA3_in+vKEA3_out
    return [dB0dt, dB1dt, dB2dt, dPQH2dt, dATPdt, dH_lumendt, ddelta_psidt, dVxdt, dPsbSdt, dATPactivitydt, dK_lumendt, dK_stromadt]

def all_derived(
    time: float,
    variables: list[float], 
):
    B0, B1, B2, PQH2, ATP, H_lumen, delta_psi, Vx, PsbS, ATPactivity, K_lumen, K_stroma = variables
    PPFD = 10
    PSIItot = 2.5
    PQtot = 20
    APtot = 50
    PsbStot = 1
    Xtot = 1
    O2ex = 8
    Pi = 0.01
    k_b6f = 0.22
    pKreg = 6.4
    kActATPase = 0.01
    kDeactATPase = 0.002
    kATPsynthase = 20
    kATPconsumption = 10
    HPR = 4.666666666666667
    pKE0 = 7.211142552636095
    b = 3.1924977471697407
    kPQH2 = 250
    kPTOX = 0.01
    kH_Qslope = 5000000000
    kH0 = 500000000
    kF = 625000000
    kP = 6939318750
    pH_stroma = 7.8
    kleak = 1000
    bH = 100
    kDeepoxV = 0.00096
    kEpoxZ = 0.0013824
    KphSatZ = 5.8
    KZsat = 0.65
    nHX = 5
    nHZ = 3
    nHL = 3
    kDeprot = 0.0336
    kProt = 0.07392
    KphSatLHC = 5.8
    gamma0 = 0.1
    gamma1 = 1
    gamma2 = 8
    gamma3 = 2
    pK_KEA3 = 6.75
    k_KEA3 = 5
    K_lumen_conc_initial = 0.1
    K_stroma_conc_initial = 0.1
    ATP_thres_KEA3 = 20.5
    c = 0.1
    F = 96.485
    R = 0.0083
    T = 298
    E0QAQAm = -0.14
    E0PQPQH2 = 0.354
    E0PCPCm = 0.38
    DeltaG0_ATP = 30.6
    e = 2.71828
    lumen_volume_per_area_membrane = 0.0014
    stroma_volume_per_area_membrane = 0.0112
    molChl_per_area_membrane = 0.00035
    thylakoid_membrane_capacitance = 0.006
    pHlumen_init = 7.2
    RT = R * T
    pH_lumen = - (np.log((0.001 * H_lumen * molChl_per_area_membrane) / (lumen_volume_per_area_membrane))) / (np.log(10))
    H_lumen_conc = (0.001 * H_lumen * molChl_per_area_membrane) / (lumen_volume_per_area_membrane)
    H_stroma = (1000 * stroma_volume_per_area_membrane * (10) ** (- pH_stroma)) / (molChl_per_area_membrane)
    H_stroma_conc = (0.001 * H_stroma * molChl_per_area_membrane) / (stroma_volume_per_area_membrane)
    delta_pH = pH_lumen + - pH_stroma
    delta_pH_V = - (2.302585092994046 * R * T * delta_pH) / (F)
    pmfV = delta_psi + - (2.302585092994046 * R * T * delta_pH) / (F)
    volts_per_charge = (1 * F * molChl_per_area_membrane) / (thylakoid_membrane_capacitance)
    PQ = PQtot + - PQH2
    ADP = APtot + - ATP
    PsbSP = PsbStot + - PsbS
    Zx = Xtot + - Vx
    Keq_PQH2 = np.exp((2 * E0PQPQH2 * F + - 2 * E0QAQAm * F + - 4.605170185988092 * R * T * pH_stroma) / (R * T))
    Keqcytb6f = np.exp((- 2 * E0PQPQH2 * F + - 2 * F * pmfV + 2 * E0PCPCm * F + 4.605170185988092 * R * T * pH_lumen) / (R * T))
    KeqATPsyn = Pi * np.exp((- DeltaG0_ATP + F * HPR * pmfV) / (R * T))
    ATP_pmf_act = ((e) ** ((F * b * pmfV) / (R * T) + np.log((10) ** (- pKE0)))) / (1 + (e) ** ((F * b * pmfV) / (R * T) + np.log((10) ** (- pKE0))))
    pHmod = 1 + - (1) / (1 + (10) ** (pH_lumen + - pKreg))
    k_cytb6f = k_b6f * pHmod
    Q0 = PsbS * Vx * gamma0
    Q1 = PsbSP * Vx * gamma1
    Q2 = PsbSP * Zx * gamma2
    Q3 = PsbS * Zx * gamma3
    Quencher_act = Q0 + Q1 + Q2 + Q3
    B3 = PSIItot + - B0 + - B1 + - B2
    rel_B0 = (B0) / (PSIItot)
    rel_B1 = (B1) / (PSIItot)
    rel_B2 = (B2) / (PSIItot)
    rel_B3 = (B3) / (PSIItot)
    qL = (B1 + B2) / (PSIItot)
    Fluo = (B0 * kF) / (kF + kH0 + kP + Quencher_act * kH_Qslope) + (B2 * kF) / (kF + kH0 + Quencher_act * kH_Qslope)
    PsbS_deprot_act = ((KZsat) ** (nHZ)) / ((KZsat) ** (nHZ) + (Zx) ** (nHZ))
    K_stroma_conc = (0.001 * K_stroma * molChl_per_area_membrane) / (stroma_volume_per_area_membrane)
    K_lumen_conc = (0.001 * K_lumen * molChl_per_area_membrane) / (lumen_volume_per_area_membrane)
    reg_KEA3_ATP = (1 + - c) / (1 + np.exp((ATP + - ATP_thres_KEA3) / (c)))
    reg_KEA3_pH = ((10) ** (pH_lumen + - pK_KEA3)) / (1 + (10) ** (pH_lumen + - pK_KEA3))
    reg_KEA3 = reg_KEA3_ATP * reg_KEA3_pH
    B01 = B0 * PPFD
    B10Q = B1 * (kH0 + Quencher_act * kH_Qslope)
    B10F = B1 * kF
    vps2 = 0.5 * B1 * kP
    B20 = B2 * PQ * kPQH2 + - (B0 * PQH2 * kPQH2) / (Keq_PQH2)
    B23 = B2 * PPFD
    B32F = B3 * kF
    B32Q = B3 * (kH0 + Quencher_act * kH_Qslope)
    vPQox = PQH2 * (O2ex * kPTOX + (Keqcytb6f * PPFD * k_cytb6f) / (1 + Keqcytb6f)) + - (PPFD * k_cytb6f * (PQtot + - PQH2)) / (1 + Keqcytb6f)
    vATPactivity = kActATPase * (1 + - ATPactivity) if PPFD > 0 else - ATPactivity * kDeactATPase
    vATPsynthase = ATP_pmf_act * ATPactivity * kATPsynthase * (ADP + - (ATP) / (KeqATPsyn))
    vATPcons = ATP * kATPconsumption
    vleak = kleak * (H_lumen_conc + - H_stroma_conc)
    vXdeepox = (Vx * kDeepoxV * (H_lumen) ** (nHX)) / ((H_lumen) ** (nHX) + ((1000 * lumen_volume_per_area_membrane * (10) ** (- KphSatZ)) / (molChl_per_area_membrane)) ** (nHX))
    vEpoxZ = Zx * kEpoxZ
    vPsbSP = (PsbS * kProt * (H_lumen) ** (nHL)) / ((H_lumen) ** (nHL) + ((1000 * lumen_volume_per_area_membrane * (10) ** (- KphSatLHC)) / (molChl_per_area_membrane)) ** (nHL))
    vPsbS = PsbSP * PsbS_deprot_act * kDeprot
    vKEA3_in = max(0, (1000 * k_KEA3 * reg_KEA3 * stroma_volume_per_area_membrane * (H_lumen_conc * K_stroma_conc + - H_stroma_conc * K_lumen_conc)) / (molChl_per_area_membrane))
    vKEA3_out = max(0, (1000 * k_KEA3 * lumen_volume_per_area_membrane * reg_KEA3 * (H_stroma_conc * K_lumen_conc + - H_lumen_conc * K_stroma_conc)) / (molChl_per_area_membrane))
    return [RT, pH_lumen, H_lumen_conc, H_stroma, H_stroma_conc, delta_pH, delta_pH_V, pmfV, volts_per_charge, PQ, ADP, PsbSP, Zx, Keq_PQH2, Keqcytb6f, KeqATPsyn, ATP_pmf_act, pHmod, k_cytb6f, Q0, Q1, Q2, Q3, Quencher_act, B3, rel_B0, rel_B1, rel_B2, rel_B3, qL, Fluo, PsbS_deprot_act, K_stroma_conc, K_lumen_conc, reg_KEA3_ATP, reg_KEA3_pH, reg_KEA3, B01, B10Q, B10F, vps2, B20, B23, B32F, B32Q, vPQox, vATPactivity, vATPsynthase, vATPcons, vleak, vXdeepox, vEpoxZ, vPsbSP, vPsbS, vKEA3_in, vKEA3_out]

derived = all_derived
y0 = {"B0": 2.5, "B1": 0, "B2": 0, "PQH2": 0, "ATP": 25, "H_lumen": 0.00025238293779207717, "delta_psi": 0, "Vx": 1, "PsbS": 1, "ATPactivity": 0.1, "K_lumen": 399.99999999999994, "K_stroma": 3199.9999999999995}
    
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Generated LaTeX Code

\begin{align*}
      \frac{d B0}{dt} &= - 2 \cdot B0 \cdot PPFD \\
  & + 2 \cdot B1 \cdot (kH0 + Quencher act. \cdot kH\_Qslope) \\
  & + 2 \cdot B1 \cdot kF \\
  & + 2 \cdot B2 \cdot PQ \cdot kPQH2 - \frac{B0 \cdot PQH2 \cdot kPQH2}{Keq\_PQH2}\\ 
\frac{d B1}{dt} &= 2 \cdot B0 \cdot PPFD \\
  & - 2 \cdot B1 \cdot (kH0 + Quencher act. \cdot kH\_Qslope) \\
  & - 2 \cdot B1 \cdot kF - 2 \cdot 0.5 \cdot B1 \cdot kP\\ 
\frac{d B2}{dt} &= 2 \cdot 0.5 \cdot B1 \cdot kP \\
  & - 2 \cdot B2 \cdot PQ \cdot kPQH2 - \frac{B0 \cdot PQH2 \cdot kPQH2}{Keq\_PQH2} \\
  & - 2 \cdot B2 \cdot PPFD + 2 \cdot B3 \cdot kF \\
  & + 2 \cdot B3 \cdot (kH0 + Quencher act. \cdot kH\_Qslope)\\ 
\frac{d PQH2}{dt} &= B2 \cdot PQ \cdot kPQH2 - \frac{B0 \cdot PQH2 \cdot kPQH2}{Keq\_PQH2} \\
  & - PQH2 \cdot (O2ex \cdot kPTOX + \frac{Keqcytb6f \cdot PPFD \cdot k\_cytb6f}{1 + Keqcytb6f}) - \frac{PPFD \cdot k\_cytb6f \cdot (PQtot - PQH2)}{1 + Keqcytb6f}\\ 
\frac{d ATP}{dt} &= ATP\_pmf\_act \cdot ATPactivity \cdot kATPsynthase \cdot (ADP - \frac{ATP}{KeqATPsyn}) \\
  & - ATP \cdot kATPconsumption\\ 
\frac{d H\_lumen}{dt} &= \frac{2}{bH} \cdot 0.5 \cdot B1 \cdot kP \\
  & + \frac{4}{bH} \cdot PQH2 \cdot (O2ex \cdot kPTOX + \frac{Keqcytb6f \cdot PPFD \cdot k\_cytb6f}{1 + Keqcytb6f}) - \frac{PPFD \cdot k\_cytb6f \cdot (PQtot - PQH2)}{1 + Keqcytb6f} \\
  & - \frac{HPR}{bH} \cdot ATP\_pmf\_act \cdot ATPactivity \cdot kATPsynthase \cdot (ADP - \frac{ATP}{KeqATPsyn}) \\
  & - \frac{1}{bH} \cdot kleak \cdot (H\_lumen\_conc - H\_stroma\_conc) \\
  & - \frac{1}{bH} \cdot \max(0, \frac{1000 \cdot k\_KEA3 \cdot reg\_KEA3 \cdot stroma\_volume\_per\_area\_membrane \cdot (H\_lumen\_conc \cdot K\_stroma\_conc - H\_stroma\_conc \cdot K\_lumen\_conc)}{molChl\_per\_area\_membrane}) \\
  & + \frac{1}{bH} \cdot \max(0, \frac{1000 \cdot k\_KEA3 \cdot lumen\_volume\_per\_area\_membrane \cdot reg\_KEA3 \cdot (H\_stroma\_conc \cdot K\_lumen\_conc - H\_lumen\_conc \cdot K\_stroma\_conc)}{molChl\_per\_area\_membrane})\\ 
\frac{d delta\_psi}{dt} &= \frac{2 \cdot volts\_per\_charge}{bH} \cdot 0.5 \cdot B1 \cdot kP \\
  & + \frac{4 \cdot volts\_per\_charge}{bH} \cdot PQH2 \cdot (O2ex \cdot kPTOX + \frac{Keqcytb6f \cdot PPFD \cdot k\_cytb6f}{1 + Keqcytb6f}) - \frac{PPFD \cdot k\_cytb6f \cdot (PQtot - PQH2)}{1 + Keqcytb6f} \\
  & - \frac{HPR \cdot volts\_per\_charge}{bH} \cdot ATP\_pmf\_act \cdot ATPactivity \cdot kATPsynthase \cdot (ADP - \frac{ATP}{KeqATPsyn}) \\
  & - \frac{volts\_per\_charge}{bH} \cdot kleak \cdot (H\_lumen\_conc - H\_stroma\_conc)\\ 
\frac{d Vx}{dt} &= - \frac{Vx \cdot kDeepoxV \cdot {H\_lumen}^{nHX}}{{H\_lumen}^{nHX} + {\frac{1000 \cdot lumen\_volume\_per\_area\_membrane \cdot {10}^{- KphSatZ}}{molChl\_per\_area\_membrane}}^{nHX}} \\
  & + Zx \cdot kEpoxZ\\ 
\frac{d PsbS}{dt} &= - \frac{PsbS \cdot kProt \cdot {H\_lumen}^{nHL}}{{H\_lumen}^{nHL} + {\frac{1000 \cdot lumen\_volume\_per\_area\_membrane \cdot {10}^{- KphSatLHC}}{molChl\_per\_area\_membrane}}^{nHL}} \\
  & + PsbSP \cdot PsbS\_deprot\_act \cdot kDeprot\\ 
\frac{d ATPactivity}{dt} &= \begin{cases}kActATPase \cdot (1 - ATPactivity) & PPFD > 0 \\ - ATPactivity \cdot kDeactATPase & \text{else}\end{cases}\\ 
\frac{d K\_lumen}{dt} &= \max(0, \frac{1000 \cdot k\_KEA3 \cdot reg\_KEA3 \cdot stroma\_volume\_per\_area\_membrane \cdot (H\_lumen\_conc \cdot K\_stroma\_conc - H\_stroma\_conc \cdot K\_lumen\_conc)}{molChl\_per\_area\_membrane}) \\
  & - \max(0, \frac{1000 \cdot k\_KEA3 \cdot lumen\_volume\_per\_area\_membrane \cdot reg\_KEA3 \cdot (H\_stroma\_conc \cdot K\_lumen\_conc - H\_lumen\_conc \cdot K\_stroma\_conc)}{molChl\_per\_area\_membrane})\\ 
\frac{d K\_stroma}{dt} &= - \max(0, \frac{1000 \cdot k\_KEA3 \cdot reg\_KEA3 \cdot stroma\_volume\_per\_area\_membrane \cdot (H\_lumen\_conc \cdot K\_stroma\_conc - H\_stroma\_conc \cdot K\_lumen\_conc)}{molChl\_per\_area\_membrane}) \\
  & + \max(0, \frac{1000 \cdot k\_KEA3 \cdot lumen\_volume\_per\_area\_membrane \cdot reg\_KEA3 \cdot (H\_stroma\_conc \cdot K\_lumen\_conc - H\_lumen\_conc \cdot K\_stroma\_conc)}{molChl\_per\_area\_membrane})
    \end{align*}

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