Models / Population Dynamics

Add analysis

Population dynamics

tune

Simulation parameters

tune

Initial conditions

analytics

Analyses

Time course

Loading chart...

Model Details

Review and edit model structure, biological variables, and kinetic parameters.

NameTex nameInitial valueActions

Edit Options

Edit Options

preview

Generated Python Code

import numpy as np

def model(
    time: float,
    variables: list[float], 
):
    e_coli, c_gluta = variables
    mu_e = 0.4
    mu_c = 0.3
    a_e = 6
    a_c = 4
    theta = 0.001
    dEdt = e_coli * a_e * mu_e
    dCdt = (c_gluta * a_c * mu_c) - (theta * c_gluta * c_gluta)
    de_colidt = +dEdt
    dc_glutadt = +dCdt
    return [de_colidt, dc_glutadt]

def all_derived(
    time: float,
    variables: list[float], 
):
    e_coli, c_gluta = variables
    mu_e = 0.4
    mu_c = 0.3
    a_e = 6
    a_c = 4
    theta = 0.001
    dEdt = e_coli * a_e * mu_e
    dCdt = (c_gluta * a_c * mu_c) - (theta * c_gluta * c_gluta)
    return [dEdt, dCdt]

derived = all_derived
y0 = {"e_coli": 5, "c_gluta": 5}
    
preview

Generated LaTeX Code

\begin{align*}
      \frac{d E. coli}{dt} &= E. coli \cdot a_e \cdot \mu_e\\ 
\frac{d C. gluta}{dt} &= C. gluta \cdot a_c \cdot \mu_c - \theta \cdot C. gluta \cdot C. gluta
    \end{align*}

Edit analysis

Plot options

Variable selection
Show Normalize